Useful learning resources, especially for R and Github: http://waldronlab.github.io
I’m actively involved in developing Bioconductor infrastructure for multi-assay -omics experiments, see development at https://github.com/vjcitn/MultiAssayExperiment.
A catalog of my published tools
survHD Bioconductor package: Synthesis of high-dimensional survival analysis.
curatedOvarianData Bioconductor package: Clinically annotated data for the ovarian cancer transcriptome.
HGNChelper R package: Handy functions for working with HGNC gene symbols.
pensim R package: Simulation of high-dimensional data and parallelized repeated penalized regression.