Tools & Resources

Useful learning resources, especially for R and Github: http://waldronlab.github.io

I’m actively involved in developing Bioconductor infrastructure for multi-assay -omics experiments, see development at https://github.com/vjcitn/MultiAssayExperiment.

A catalog of my published tools

survHD Bioconductor package: Synthesis of high-dimensional survival analysis.

curatedOvarianData Bioconductor package: Clinically annotated data for the ovarian cancer transcriptome.

HGNChelper R package: Handy functions for working with HGNC gene symbols.

ffpe and ffpeExampleData Bioconductor packages: Quality assessment and control for FFPE microarray expression data.

pensim R package: Simulation of high-dimensional data and parallelized repeated penalized regression.